This function prepares Sirius results to make them compatible
Usage
prepare_annotations_sirius(
input_directory = get_params(step =
"prepare_annotations_sirius")$files$annotations$raw$sirius,
output_ann = get_params(step =
"prepare_annotations_sirius")$files$annotations$prepared$structural$sirius,
output_can = get_params(step =
"prepare_annotations_sirius")$files$annotations$prepared$canopus,
output_for = get_params(step =
"prepare_annotations_sirius")$files$annotations$prepared$formula,
sirius_version = get_params(step = "prepare_annotations_sirius")$tools$sirius$version,
str_stereo = get_params(step =
"prepare_annotations_sirius")$files$libraries$sop$merged$structures$stereo,
str_met = get_params(step =
"prepare_annotations_sirius")$files$libraries$sop$merged$structures$metadata,
str_nam = get_params(step =
"prepare_annotations_sirius")$files$libraries$sop$merged$structures$names,
str_tax_cla = get_params(step =
"prepare_annotations_sirius")$files$libraries$sop$merged$structures$taxonomies$cla,
str_tax_npc = get_params(step =
"prepare_annotations_sirius")$files$libraries$sop$merged$structures$taxonomies$npc
)Arguments
- input_directory
Directory containing the Sirius results
- output_ann
Output where to save prepared annotation results
- output_can
Output where to save prepared canopus results
- output_for
Output where to save prepared formula results
- sirius_version
Sirius version
- str_stereo
File containing structures stereo
- str_met
File containing structures metadata
- str_nam
File containing structures names
- str_tax_cla
File containing Classyfire taxonomy
- str_tax_npc
File containing NPClassifier taxonomy