Prepare annotations MS2

This function prepares the spectral matches obtained previously to make them compatible

Usage

prepare_annotations_spectra(
  input = get_params(step =
    "prepare_annotations_spectra")$files$annotations$raw$spectral$spectral,
  output = get_params(step =
    "prepare_annotations_spectra")$files$annotations$prepared$structural$spectral,
  str_stereo = get_params(step =
    "prepare_annotations_spectra")$files$libraries$sop$merged$structures$stereo,
  str_met = get_params(step =
    "prepare_annotations_spectra")$files$libraries$sop$merged$structures$metadata,
  str_nam = get_params(step =
    "prepare_annotations_spectra")$files$libraries$sop$merged$structures$names,
  str_tax_cla = get_params(step =
    "prepare_annotations_spectra")$files$libraries$sop$merged$structures$taxonomies$cla,
  str_tax_npc = get_params(step =
    "prepare_annotations_spectra")$files$libraries$sop$merged$structures$taxonomies$npc
)

Arguments

input

Input file

output

Output file

str_stereo

File containing structures stereo

str_met

File containing structures metadata

str_nam

File containing structures names

str_tax_cla

File containing Classyfire taxonomy

str_tax_npc

File containing NPClassifier taxonomy

Examples

NULL
#> NULL