This function gets GNPS tables from corresponding job ID.
Usage
get_gnps_tables(
gnps_job_id,
gnps_job_example = get_default_paths()$gnps$example,
filename,
workflow = "fbmn",
path_features,
path_metadata,
path_spectra,
path_source = get_default_paths()$data$source$path,
path_interim_a = get_default_paths()$data$interim$annotations$path,
path_interim_f = get_default_paths()$data$interim$features$path
)Arguments
- gnps_job_id
GNPS job ID
- gnps_job_example
GNPS job example
- filename
Name of the file
- workflow
Character string indicating the type of workflow, either "fbmn" or "classical"
- path_features
Path to features
- path_metadata
Path to metadata
- path_spectra
Path to spectra
- path_source
Path to store the source files
- path_interim_a
Path to store the interim annotations file
- path_interim_f
Path to store the interim features files