Get organism taxonomy (Open Tree of Life Taxonomy) — get_organism_taxonomy_ott • tima

This function retrieves taxonomy from the Open Tree of Life taxonomy

Usage

get_organism_taxonomy_ott(
  df,
  url = "https://api.opentreeoflife.org/v3/taxonomy/about",
  retry = TRUE
)

Arguments

df: Dataframe containing your organism(s) name(s)
url: url of the ott api (for testing purposes)
retry: Boolean. Retry with generic epithet

Value

The path to the obtained OTT taxonomy

Examples

if (FALSE) { # \dontrun{
df <- data.frame("organism" = "Homo sapiens")
get_organism_taxonomy_ott(df)
} # }